{"id":112,"date":"2019-01-13T11:15:27","date_gmt":"2019-01-13T18:15:27","guid":{"rendered":"https:\/\/sites.psych.ualberta.ca\/kylemathewson\/?page_id=112"},"modified":"2019-01-13T11:33:02","modified_gmt":"2019-01-13T18:33:02","slug":"optical-imaging","status":"publish","type":"page","link":"https:\/\/sites.psych.ualberta.ca\/kylemathewson\/optical-imaging\/","title":{"rendered":"Optical Imaging"},"content":{"rendered":"

CLICK ON THE PARTS OR FILES TO LEARN MORE (Videos, Examples, Software, tips, etc.)
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TITLE<\/h3>\n
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abc1234.avg<\/h3>\n
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CHANNEL 1, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231,
\n0, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231,
\n-76.80000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\n-51.20000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\n-25.60000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\n0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\n25.60000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\n51.20000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\n76.80000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\n…
\n1305.60000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 0.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000, 1.00000,
\nCHANNEL 2, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231,
\n0, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231, 79, 389, 0, 0, 234, 3, 231,
\n-76.80000, 1.10723, 1.02485, 1.00000, 1.00000, 0.98952, 0.93185, 0.98757, 9.65786, 21.68817, 0.00000, 0.00000, -97.82085, 1322.28634, -19.69539, 0.94615, 1.00952, 1.00000, 1.00000, 0.99004, 1.28950, 1.03857,
\n-51.20000, 1.02693, 0.99096, 1.00000, 1.00000, 1.03181, 0.88594, 1.01468, 21.00722, 19.28853, 0.00000, 0.00000, 25.13147, 1493.20528, 15.44016, 1.02438, 0.98089, 1.00000, 1.00000, 0.97215, 0.71483, 1.03634,
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abc1234.skp<\/h3>\n
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1 1 1 1
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abc.mdf<\/h3>\n
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110<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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Black Large_SeshA_DOIL1_DetA-D_AC.gds.1<\/h3>\n
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#Graph Title=Det A
\n#Left Y Axis Title=AC
\n#X Axis Title=Mux
\n#Tab Title=Black Large_SeshA_DOIL1 AC A-D
\n#Left Y Axis Max=8000
\n#Left Y Axis Min=0
\n#Number Series=16
\n#\tData Source\tLabel\tColor Index
\n1\tAC-A,1\t1\t1
\n2\tAC-A,2\t2\t7
\n3\tAC-A,3\t3\t1
\n4\tAC-A,4\t4\t7
\n5\tAC-A,5\t5\t7
\n6\tAC-A,6\t6\t1
\n7\tAC-A,7\t7\t1
\n8\tAC-A,8\t8\t16
\n9\tAC-A,9\t9\t16
\n10\tAC-A,10\t10\t9
\n11\tAC-A,11\t11\t7
\n12\tAC-A,12\t12\t7
\n13\tAC-A,13\t13\t4
\n14\tAC-A,14\t14\t7
\n15\tAC-A,15\t15\t9
\n16\tAC-A,16\t16\t1<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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abc1234.tol<\/h3>\n
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LA03\t-16.451268\t-56.718037\t65.972694
\nLA04\t-20.737362\t-65.440054\t55.403382
\nLA05\t-24.013639\t-75.191294\t43.904370
\nLA06\t-27.832546\t-82.208614\t31.593839
\nLA07\t-31.433332\t-85.346488\t15.724475
\nLA08\t-31.718029\t-86.052412\t5.025211
\nLB04\t-32.053446\t-59.784340\t54.632731
\nLB05\t-35.287412\t-69.381639\t42.984819
\nLB06\t-39.135618\t-75.584607\t33.850611
\nLB07\t-42.639126\t-79.229113\t17.083744
\nLB08\t-43.115701\t-78.748476\t2.196800
\nLC04\t-43.814907\t-53.299690\t54.353484
\nLC05\t-46.354351\t-61.181362\t44.033735
\nLC06\t-51.197348\t-67.804808\t29.374750
\nLC07\t-54.015860\t-70.817729\t17.952822
\nLC08\t-54.893658\t-70.411511\t5.114162
\nRA04\t-3.920662\t-74.079076\t52.631999
\nRA05\t-5.128288\t-83.149746\t42.509839
\nRA06\t-8.127239\t-89.758384\t31.334010
\nRA07\t-10.959048\t-92.749164\t17.157967
\nRB05\t2.735681\t-81.084023\t44.987765
\nRB06\t3.209241\t-87.728413\t35.375240
\nRB07\t1.056837\t-92.929467\t21.669397
\nRB08\t-0.916667\t-94.281475\t9.464653<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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abc.loc<\/h3>\n
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E:\\DATA\\abc\\o3d\\brain2.vmi
\nE:\\DATA\\abc\\o3d\\brain2.tai
\n128 48
\n2
\nE:\\DATA\\abc\\reg\\abc0311_good.mtg
\nE:\\DATA\\abc\\reg\\abc0311.tol
\n2
\nE:\\DATA\\abc\\reg\\abc0439_good.mtg
\nE:\\DATA\\abc\\reg\\abc0439.tol
\n2
\nE:\\DATA\\abc\\reg\\abc0440_good.mtg
\nE:\\DATA\\abc\\reg\\abc0440.tol
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abc.dat<\/h3>\n
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E:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0311a.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0311b.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0311c.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0311d.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0439a.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0439b.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0439c.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0439d.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0440a.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0440b.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0440c.avg
\nE:\\Data\\abc\\pc00-15\\avg_backup_detundet\\abc0440d.avg<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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abc.des<\/h3>\n
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3
\nDet
\nUndet
\nDiff
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0 -1 1 0 0 0 0 0<\/p>\n

2
\nDet
\nUndet
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0
\n0 1 0 0 0 0 0 1 0 0 0 0 0 0<\/p>\n

1
\nD-UD
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0
\n-1 1 0 0 0 0 0<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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abc.roi<\/h3>\n
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3
\n1 Timefreq – Cuneas
\n1. -20. 20. -100. -70. 15. 45.
\n1 Cingulate
\n1. -15. 15. 10. 40. 30. 60.
\n1 V1
\n1. -20. 20. -105. -90. -25. -5.<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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OPT2\/Data_MMDDYY_HHMMSS.txt –> OPT\/abc1234.001<\/h3>\n
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BOXY.EXE: ISS Imagent and Oximeter Data Acquisition Program Version 0.80
\nAscii Record File<\/p>\n

#ACQ INFORMATION
\n16 Detector Channels
\n16 External MUX Channels
\n2 Auxiliary Analog Channels
\n3125 Waveform (CCF) Frequency (Hz)
\n1 Waveforms Skipped
\n4 Waveforms Averaged
\n1 Cycles Averaged
\n8 Acquisitions per Waveform
\n1 Auxiliary Digital Channels<\/p>\n

#Data Update Rate
\n39.0625 Update Rate (Hz)
\n…
\n#DATA BEGINS
\nrecord\texmux\tA-AC\tA-DC\tA-Ph\tB-AC\tB-DC\tB-Ph\tC-AC\tC-DC\tC-Ph\tD-AC\tD-DC\tD-Ph\tE-AC\tE-DC\tE-Ph\tF-AC\tF-DC\tF-Ph\tG-AC\tG-DC\tG-Ph\tH-AC\tH-DC\tH-Ph\tI-AC\tI-DC\tI-Ph\tJ-AC\tJ-DC\tJ-Ph\tK-AC\tK-DC\tK-Ph\tL-AC\tL-DC\tL-Ph\tM-AC\tM-DC\tM-Ph\tN-AC\tN-DC\tN-Ph\tO-AC\tO-DC\tO-Ph\tP-AC\tP-DC\tP-Ph\ttime\tgroup\tstep\tmark\tflag\taux-1\taux-2\tdigaux<\/p>\n

1\t1\t5147.65\t17140.7\t149.004\t3337.96\t11755.8\t84.504\t792.777\t2776.41\t133.920\t64.2932\t222.156\t152.316\t3.3615\t12.0938\t-86.253\t1.97375\t10.2188\t-90.767\t1660.51\t3456.66\t147.674\t717.683\t1980.09\t129.977\t45.7082\t211.281\t93.074\t8.32685\t10.6875\t124.181\t36.2453\t88.2812\t14.465\t33.4033\t136.344\t92.643\t58.29\t640.062\t245.593\t112.069\t1128.22\t73.974\t137.283\t1735.19\t27.207\t61.347\t2262.94\t222.228\t3027.258\t1\t1\t0\t768\t-8191\t-8191\t0
\n1\t2\t4849.22\t7200.88\t250.410\t3781.44\t6312.44\t178.745\t1368.52\t2222.06\t230.320\t67.1022\t140.156\t238.088\t1.95117\t4.90625\t33.442\t3.08164\t6.25\t262.373\t2512.89\t3163.78\t225.030\t1600.99\t2079.53\t236.464\t41.086\t209.469\t233.933\t8.79326\t12.1875\t111.162\t11.2603\t108.062\t109.615\t14.7511\t130.375\t256.154\t74.5105\t671.281\t399.040\t55.2325\t1219.16\t111.484\t118.162\t1841.47\t-54.922\t92.265\t2425.03\t393.239
\n1\t3\t621.703\t911.281\t235.118\t1534.75\t2767.75\t165.007\t10730.7\t18257.5\t203.541\t5065.28\t7770.19\t211.680\t44.8764\t89.25\t-92.499\t9.04035\t16.5625\t-78.397\t1876.99\t2329.34\t212.700\t4399.54\t5998.78\t208.143\t945.905\t1196.62\t144.278\t72.3449\t123.969\t165.864\t38.511\t119.25\t71.437\t31.1495\t148.938\t207.003\t69.5414\t747.062\t394.775\t158.227\t1188.09\t146.115\t184.386\t1901.88\t131.696\t100.968\t2336\t225.263
\n1\t4\t221.61\t363.812\t256.655\t665.018\t1170.88\t176.308\t8113.26\t13013.2\t211.295\t3385.92\t4878.25\t219.049\t26.8136\t47.875\t-76.196\t8.44456\t10.5625\t261.270\t1705.27\t1786.88\t216.009\t4428.82\t4804.03\t215.252\t460.599\t601.875\t164.184\t27.8759\t58.7812\t163.014\t32.0587\t110.469\t139.249\t21.0072\t109.344\t-66.701\t54.5708\t699.344\t352.060\t85.0476\t1279.59\t192.500\t169.988\t2157.12\t-16.520\t114.183\t2547.44\t124.530
\n1\t5\t30.8217\t61.4375\t273.329\t37.4747\t63.6562\t157.586\t1273.13\t2178.12\t186.913\t9307.73\t14104.1\t185.781\t378.945\t665.781\t230.277\t83.1788\t130.875\t225.619\t129.711\t202.562\t186.944\t847.845\t952.469\t177.576\t1039.45\t1110.53\t120.112\t264.7\t322.094\t141.503\t62.7776\t153.594\t118.963\t27.7374\t90.0625\t-25.640\t90.1303\t630.844\t171.810\t24.1168\t1188.53\t-31.196\t164.457\t1960\t37.371\t143.983\t2255.97\t117.885
\n1\t6\t9.2062\t40.3438\t116.981\t10.7931\t21.2188\t200.521\t652.899\t1053.44\t219.134\t3901.27\t5848.75\t215.538\t160.044\t268.375\t-94.156\t42.5412\t62.3438\t261.935\t120.193\t113.625\t237.447\t650.158\t788.375\t211.856\t304.312\t435.031\t147.740\t81.6316\t102.5\t153.994\t11.8927\t134.906\t-103.428\t32.5081\t139.844\t167.459\t54.5475\t626.281\t178.752\t73.3375\t1028.84\t74.257\t145.042\t1864.31\t145.501\t159.376\t2138.09\t376.665
\n1\t7\t2.15764\t42.4375\t49.351\t6.31702\t9.71875\t162.505\t208.907\t378.938\t199.194\t9830.4\t15450.1\t192.047\t8029.16\t14639.9\t227.366\t6785.93\t11658.8\t223.276\t65.0983\t80.4688\t210.276\t266.857\t578.812\t174.021\t1133.78\t1313.41\t138.805\t3277.74\t3603.03\t139.407\t1383.69\t1800.44\t114.579\t17.6607\t113.938\t151.574\t12.6988\t612.188\t422.651\t61.8913\t1216.97\t238.739\t170.768\t1785.59\t-125.014\t73.4599\t2304.69\t305.689
\n1\t8\t15.333\t40.7812\t219.660\t1.49324\t2.71875\t81.956\t64.4677\t118.062\t227.675\t3036.35\t4467.59\t221.945\t2909.84\t4883.34\t256.702\t2665.1\t4322.25\t253.031\t82.3302\t60.4688\t-40.601\t170.105\t229.25\t243.598\t289.709\t424.406\t168.206\t665.355\t767.938\t168.974\t284.71\t449.656\t147.681\t13.6921\t140.781\t7.832\t52.7915\t590.75\t387.934\t121.425\t1247.47\t-38.904\t71.7801\t2073.97\t157.107\t58.1944\t2494.97\t211.021
\n1\t9\t106.526\t223.25\t241.267\t73.0523\t129\t174.906\t137.039\t240.469\t225.042\t28.0234\t103.031\t223.644\t0.749194\t8.9375\t255.361\t0.493505\t6.78125\t-14.140\t138.496\t148.438\t-67.570\t182.329\t188.688\t237.345\t60.4546\t180.781\t70.999\t23.7568\t22.7812\t97.299\t63.9574\t121.031\t141.215\t24.9166\t145.031\t226.443\t56.8253\t659.469\t190.558\t79.185\t1316.69\t29.438\t60.6403\t2056\t-77.061\t96.4391\t2489.19\t196.597
\n1\t10\t21.3336\t61.0938\t0.025\t13.2384\t18.2812\t184.952\t34.449\t67.2188\t226.277\t17.9545\t43.2188\t116.700\t4.47638\t3.21875\t222.784\t4.29221\t5.09375\t206.919\t18.4788\t95.0312\t-50.712\t28.7386\t76.6875\t26.225\t65.776\t168.312\t-42.420\t7.33675\t20.5\t-5.801\t45.2182\t116.625\t144.328\t25.0303\t165.438\t101.142\t36.9946\t675\t303.857\t78.7284\t1215.59\t188.280\t137.254\t1959.62\t-68.914\t82.7219\t2347.16\t187.473
\n1\t11\t21.6726\t65.5\t258.164\t40.1574\t82.875\t188.176\t405.414\t734.031\t209.435\t930.468\t1460.47\t205.958\t45.6775\t73.875\t254.740\t7.4336\t24.75\t-85.669\t83.478\t134.438\t238.919\t200.497\t350.594\t228.947\t66.8781\t216.781\t152.053\t46.7569\t47.8438\t139.986\t13.8132\t111.125\t161.918\t18.7398\t111.625\t231.716\t24.1282\t666.156\t419.227\t100.122\t1140.5\t-49.071\t92.3132\t1838.44\t146.826\t44.5761\t2139.72\t316.278
\n1\t12\t25.5637\t59.9062\t226.717\t21.0347\t33.7812\t183.116\t217.757\t364.625\t221.590\t349.198\t563.594\t223.397\t16.0038\t21.6875\t-63.385\t10.5977\t10.6875\t-85.685\t85.9426\t94.0938\t230.047\t114.92\t206.469\t214.133\t18.1587\t124.562\t184.647\t24.0893\t30.5938\t154.752\t9.34626\t99.1875\t100.741\t35.275\t116.531\t73.559\t36.9541\t618.125\t381.762\t63.1259\t1077.22\t-79.796\t58.6989\t1606.25\t-59.903\t129.834\t2302.62\t112.643
\n1\t13\t9.74092\t60.3438\t278.560\t8.1269\t12.8125\t218.157\t127.75\t229.281\t231.259\t1195.96\t1994.59\t237.819\t270.302\t479.219\t-90.176\t167.306\t299.719\t-91.408\t65.248\t64.625\t189.022\t112.071\t219.75\t241.411\t30.0565\t267.156\t170.418\t128.22\t167.031\t164.222\t42.0418\t145.75\t174.806\t38.5732\t116.75\t208.464\t41.5664\t640.406\t324.316\t4.5634\t1084.38\t203.822\t124.707\t2037.41\t-88.866\t216.872\t2513.09\t261.690
\n1\t14\t7.30923\t37.5\t43.083\t0.475615\t4.625\t-46.670\t42.6332\t97.8438\t233.374\t441.461\t653.344\t235.484\t80.7645\t136.625\t-86.071\t63.8139\t102.406\t-73.064\t8.89036\t25.6562\t-28.148\t39.6653\t102.719\t235.383\t37.6703\t161.844\t213.738\t13.9131\t37.0625\t-40.739\t29.0649\t114.969\t86.593\t23.3681\t145.688\t-19.925\t41.4522\t701.906\t391.576\t149.892\t1261\t130.892\t275.613\t2073.69\t-112.749\t114.766\t2561.5\t123.065
\n1\t15\t11.8763\t41.9062\t108.879\t2.59355\t4.28125\t154.184\t13.1867\t33.4375\t-86.108\t186.636\t388.438\t241.680\t251.423\t461.812\t-86.525\t740.937\t1231.25\t-94.794\t27.0981\t93.4062\t187.777\t35.7222\t50.25\t2.493\t24.9585\t168.062\t184.783\t99.2571\t151.031\t190.300\t98.2379\t225.531\t168.985\t34.4311\t114.406\t38.917\t149.075\t673.969\t225.073\t95.6004\t1195.5\t229.979\t198.136\t2007\t-35.537\t55.7675\t2433.75\t224.726
\n1\t16\t10.6517\t28.8438\t32.404\t3.22953\t4.5625\t169.889\t9.15887\t25.9688\t-78.324\t119.062\t227.719\t257.992\t192.298\t322.75\t-72.425\t614.862\t977.188\t-79.047\t15.7517\t21.4062\t104.509\t50.566\t47.7812\t256.932\t44.5324\t117.219\t180.479\t72.7003\t87.7188\t207.902\t83.9351\t165.438\t172.056\t8.96482\t132.156\t55.693\t26.0414\t640\t243.381\t91.1267\t1140.56\t147.805\t101.1\t1867.31\t-98.334\t51.638\t2209.84\t328.944
\n2\t1\t5289.68\t17139\t151.142\t3295.77\t11754.1\t86.671\t839.672\t2789.16\t129.641\t70.9526\t199.906\t164.477\t6.16709\t2.40625\t225.933\t4.73702\t5.71875\t-76.245\t1123.99\t3745.81\t136.251\t793.797\t2417.81\t130.763\t34.4531\t197.094\t101.391\t9.19389\t15.75\t5.430\t9.39667\t77.9688\t341.963\t9.56361\t123.125\t184.441\t19.6428\t578.125\t328.285\t67.7087\t1038.38\t80.817\t15.2473\t1791.88\t105.045\t81.7029\t2309.38\t334.174\t3027.284\t1\t1\t0\t0\t-8191\t-8191\t123<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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OPT\/abc1234.001<\/h3>\n
\n
\n

BOXY.EXE: ISS Imagent and Oximeter Data Acquisition Program Version 0.80
\nAscii Record File<\/p>\n

#ACQ INFORMATION
\n16 Detector Channels
\n16 External MUX Channels
\n2 Auxiliary Analog Channels
\n3125 Waveform (CCF) Frequency (Hz)
\n1 Waveforms Skipped
\n4 Waveforms Averaged
\n1 Cycles Averaged
\n8 Acquisitions per Waveform
\n1 Auxiliary Digital Channels<\/p>\n

#Data Update Rate
\n39.0625 Update Rate (Hz)
\n…
\n#DATA BEGINS
\nrecord\texmux\tA-AC\tA-DC\tA-Ph\tB-AC\tB-DC\tB-Ph\tC-AC\tC-DC\tC-Ph\tD-AC\tD-DC\tD-Ph\tE-AC\tE-DC\tE-Ph\tF-AC\tF-DC\tF-Ph\tG-AC\tG-DC\tG-Ph\tH-AC\tH-DC\tH-Ph\tI-AC\tI-DC\tI-Ph\tJ-AC\tJ-DC\tJ-Ph\tK-AC\tK-DC\tK-Ph\tL-AC\tL-DC\tL-Ph\tM-AC\tM-DC\tM-Ph\tN-AC\tN-DC\tN-Ph\tO-AC\tO-DC\tO-Ph\tP-AC\tP-DC\tP-Ph\ttime\tgroup\tstep\tmark\tflag\taux-1\taux-2\tdigaux<\/p>\n

1\t1\t5147.65\t17140.7\t149.004\t3337.96\t11755.8\t84.504\t792.777\t2776.41\t133.920\t64.2932\t222.156\t152.316\t3.3615\t12.0938\t-86.253\t1.97375\t10.2188\t-90.767\t1660.51\t3456.66\t147.674\t717.683\t1980.09\t129.977\t45.7082\t211.281\t93.074\t8.32685\t10.6875\t124.181\t36.2453\t88.2812\t14.465\t33.4033\t136.344\t92.643\t58.29\t640.062\t245.593\t112.069\t1128.22\t73.974\t137.283\t1735.19\t27.207\t61.347\t2262.94\t222.228\t3027.258\t1\t1\t0\t768\t-8191\t-8191\t0
\n1\t2\t4849.22\t7200.88\t250.410\t3781.44\t6312.44\t178.745\t1368.52\t2222.06\t230.320\t67.1022\t140.156\t238.088\t1.95117\t4.90625\t33.442\t3.08164\t6.25\t262.373\t2512.89\t3163.78\t225.030\t1600.99\t2079.53\t236.464\t41.086\t209.469\t233.933\t8.79326\t12.1875\t111.162\t11.2603\t108.062\t109.615\t14.7511\t130.375\t256.154\t74.5105\t671.281\t399.040\t55.2325\t1219.16\t111.484\t118.162\t1841.47\t-54.922\t92.265\t2425.03\t393.239
\n1\t3\t621.703\t911.281\t235.118\t1534.75\t2767.75\t165.007\t10730.7\t18257.5\t203.541\t5065.28\t7770.19\t211.680\t44.8764\t89.25\t-92.499\t9.04035\t16.5625\t-78.397\t1876.99\t2329.34\t212.700\t4399.54\t5998.78\t208.143\t945.905\t1196.62\t144.278\t72.3449\t123.969\t165.864\t38.511\t119.25\t71.437\t31.1495\t148.938\t207.003\t69.5414\t747.062\t394.775\t158.227\t1188.09\t146.115\t184.386\t1901.88\t131.696\t100.968\t2336\t225.263
\n1\t4\t221.61\t363.812\t256.655\t665.018\t1170.88\t176.308\t8113.26\t13013.2\t211.295\t3385.92\t4878.25\t219.049\t26.8136\t47.875\t-76.196\t8.44456\t10.5625\t261.270\t1705.27\t1786.88\t216.009\t4428.82\t4804.03\t215.252\t460.599\t601.875\t164.184\t27.8759\t58.7812\t163.014\t32.0587\t110.469\t139.249\t21.0072\t109.344\t-66.701\t54.5708\t699.344\t352.060\t85.0476\t1279.59\t192.500\t169.988\t2157.12\t-16.520\t114.183\t2547.44\t124.530
\n1\t5\t30.8217\t61.4375\t273.329\t37.4747\t63.6562\t157.586\t1273.13\t2178.12\t186.913\t9307.73\t14104.1\t185.781\t378.945\t665.781\t230.277\t83.1788\t130.875\t225.619\t129.711\t202.562\t186.944\t847.845\t952.469\t177.576\t1039.45\t1110.53\t120.112\t264.7\t322.094\t141.503\t62.7776\t153.594\t118.963\t27.7374\t90.0625\t-25.640\t90.1303\t630.844\t171.810\t24.1168\t1188.53\t-31.196\t164.457\t1960\t37.371\t143.983\t2255.97\t117.885
\n1\t6\t9.2062\t40.3438\t116.981\t10.7931\t21.2188\t200.521\t652.899\t1053.44\t219.134\t3901.27\t5848.75\t215.538\t160.044\t268.375\t-94.156\t42.5412\t62.3438\t261.935\t120.193\t113.625\t237.447\t650.158\t788.375\t211.856\t304.312\t435.031\t147.740\t81.6316\t102.5\t153.994\t11.8927\t134.906\t-103.428\t32.5081\t139.844\t167.459\t54.5475\t626.281\t178.752\t73.3375\t1028.84\t74.257\t145.042\t1864.31\t145.501\t159.376\t2138.09\t376.665
\n1\t7\t2.15764\t42.4375\t49.351\t6.31702\t9.71875\t162.505\t208.907\t378.938\t199.194\t9830.4\t15450.1\t192.047\t8029.16\t14639.9\t227.366\t6785.93\t11658.8\t223.276\t65.0983\t80.4688\t210.276\t266.857\t578.812\t174.021\t1133.78\t1313.41\t138.805\t3277.74\t3603.03\t139.407\t1383.69\t1800.44\t114.579\t17.6607\t113.938\t151.574\t12.6988\t612.188\t422.651\t61.8913\t1216.97\t238.739\t170.768\t1785.59\t-125.014\t73.4599\t2304.69\t305.689
\n1\t8\t15.333\t40.7812\t219.660\t1.49324\t2.71875\t81.956\t64.4677\t118.062\t227.675\t3036.35\t4467.59\t221.945\t2909.84\t4883.34\t256.702\t2665.1\t4322.25\t253.031\t82.3302\t60.4688\t-40.601\t170.105\t229.25\t243.598\t289.709\t424.406\t168.206\t665.355\t767.938\t168.974\t284.71\t449.656\t147.681\t13.6921\t140.781\t7.832\t52.7915\t590.75\t387.934\t121.425\t1247.47\t-38.904\t71.7801\t2073.97\t157.107\t58.1944\t2494.97\t211.021
\n1\t9\t106.526\t223.25\t241.267\t73.0523\t129\t174.906\t137.039\t240.469\t225.042\t28.0234\t103.031\t223.644\t0.749194\t8.9375\t255.361\t0.493505\t6.78125\t-14.140\t138.496\t148.438\t-67.570\t182.329\t188.688\t237.345\t60.4546\t180.781\t70.999\t23.7568\t22.7812\t97.299\t63.9574\t121.031\t141.215\t24.9166\t145.031\t226.443\t56.8253\t659.469\t190.558\t79.185\t1316.69\t29.438\t60.6403\t2056\t-77.061\t96.4391\t2489.19\t196.597
\n1\t10\t21.3336\t61.0938\t0.025\t13.2384\t18.2812\t184.952\t34.449\t67.2188\t226.277\t17.9545\t43.2188\t116.700\t4.47638\t3.21875\t222.784\t4.29221\t5.09375\t206.919\t18.4788\t95.0312\t-50.712\t28.7386\t76.6875\t26.225\t65.776\t168.312\t-42.420\t7.33675\t20.5\t-5.801\t45.2182\t116.625\t144.328\t25.0303\t165.438\t101.142\t36.9946\t675\t303.857\t78.7284\t1215.59\t188.280\t137.254\t1959.62\t-68.914\t82.7219\t2347.16\t187.473
\n1\t11\t21.6726\t65.5\t258.164\t40.1574\t82.875\t188.176\t405.414\t734.031\t209.435\t930.468\t1460.47\t205.958\t45.6775\t73.875\t254.740\t7.4336\t24.75\t-85.669\t83.478\t134.438\t238.919\t200.497\t350.594\t228.947\t66.8781\t216.781\t152.053\t46.7569\t47.8438\t139.986\t13.8132\t111.125\t161.918\t18.7398\t111.625\t231.716\t24.1282\t666.156\t419.227\t100.122\t1140.5\t-49.071\t92.3132\t1838.44\t146.826\t44.5761\t2139.72\t316.278
\n1\t12\t25.5637\t59.9062\t226.717\t21.0347\t33.7812\t183.116\t217.757\t364.625\t221.590\t349.198\t563.594\t223.397\t16.0038\t21.6875\t-63.385\t10.5977\t10.6875\t-85.685\t85.9426\t94.0938\t230.047\t114.92\t206.469\t214.133\t18.1587\t124.562\t184.647\t24.0893\t30.5938\t154.752\t9.34626\t99.1875\t100.741\t35.275\t116.531\t73.559\t36.9541\t618.125\t381.762\t63.1259\t1077.22\t-79.796\t58.6989\t1606.25\t-59.903\t129.834\t2302.62\t112.643
\n1\t13\t9.74092\t60.3438\t278.560\t8.1269\t12.8125\t218.157\t127.75\t229.281\t231.259\t1195.96\t1994.59\t237.819\t270.302\t479.219\t-90.176\t167.306\t299.719\t-91.408\t65.248\t64.625\t189.022\t112.071\t219.75\t241.411\t30.0565\t267.156\t170.418\t128.22\t167.031\t164.222\t42.0418\t145.75\t174.806\t38.5732\t116.75\t208.464\t41.5664\t640.406\t324.316\t4.5634\t1084.38\t203.822\t124.707\t2037.41\t-88.866\t216.872\t2513.09\t261.690
\n1\t14\t7.30923\t37.5\t43.083\t0.475615\t4.625\t-46.670\t42.6332\t97.8438\t233.374\t441.461\t653.344\t235.484\t80.7645\t136.625\t-86.071\t63.8139\t102.406\t-73.064\t8.89036\t25.6562\t-28.148\t39.6653\t102.719\t235.383\t37.6703\t161.844\t213.738\t13.9131\t37.0625\t-40.739\t29.0649\t114.969\t86.593\t23.3681\t145.688\t-19.925\t41.4522\t701.906\t391.576\t149.892\t1261\t130.892\t275.613\t2073.69\t-112.749\t114.766\t2561.5\t123.065
\n1\t15\t11.8763\t41.9062\t108.879\t2.59355\t4.28125\t154.184\t13.1867\t33.4375\t-86.108\t186.636\t388.438\t241.680\t251.423\t461.812\t-86.525\t740.937\t1231.25\t-94.794\t27.0981\t93.4062\t187.777\t35.7222\t50.25\t2.493\t24.9585\t168.062\t184.783\t99.2571\t151.031\t190.300\t98.2379\t225.531\t168.985\t34.4311\t114.406\t38.917\t149.075\t673.969\t225.073\t95.6004\t1195.5\t229.979\t198.136\t2007\t-35.537\t55.7675\t2433.75\t224.726
\n1\t16\t10.6517\t28.8438\t32.404\t3.22953\t4.5625\t169.889\t9.15887\t25.9688\t-78.324\t119.062\t227.719\t257.992\t192.298\t322.75\t-72.425\t614.862\t977.188\t-79.047\t15.7517\t21.4062\t104.509\t50.566\t47.7812\t256.932\t44.5324\t117.219\t180.479\t72.7003\t87.7188\t207.902\t83.9351\t165.438\t172.056\t8.96482\t132.156\t55.693\t26.0414\t640\t243.381\t91.1267\t1140.56\t147.805\t101.1\t1867.31\t-98.334\t51.638\t2209.84\t328.944
\n2\t1\t5289.68\t17139\t151.142\t3295.77\t11754.1\t86.671\t839.672\t2789.16\t129.641\t70.9526\t199.906\t164.477\t6.16709\t2.40625\t225.933\t4.73702\t5.71875\t-76.245\t1123.99\t3745.81\t136.251\t793.797\t2417.81\t130.763\t34.4531\t197.094\t101.391\t9.19389\t15.75\t5.430\t9.39667\t77.9688\t341.963\t9.56361\t123.125\t184.441\t19.6428\t578.125\t328.285\t67.7087\t1038.38\t80.817\t15.2473\t1791.88\t105.045\t81.7029\t2309.38\t334.174\t3027.284\t1\t1\t0\t0\t-8191\t-8191\t123<\/p>\n<\/div>\n<\/div>\n<\/div>\n

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abc1234.mtg<\/h3>\n
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NEW
\n256
\n1\t 1\t RA04\t LA03\t 830\t 110
\n2\t 2\t RA04\t LA03\t 690\t 110
\n3\t 3\t RA05\t LA03\t 830\t 110
\n4\t 4\t RA05\t LA03\t 690\t 110
\n5\t 5\t RA06\t LA03\t 830\t 110
\n6\t 6\t RA06\t LA03\t 690\t 110
\n7\t 7\t RA07\t LA03\t 830\t 110
\n8\t 8\t RA07\t LA03\t 690\t 110
\n9\t 9\t RB05\t LA03\t 830\t 110
\n10\t 10\t RB05\t LA03\t 690\t 110
\n11\t 11\t RB06\t LA03\t 830\t 110
\n12\t 12\t RB06\t LA03\t 690\t 110
\n13\t 13\t RB07\t LA03\t 830\t 110
\n14\t 14\t RB07\t LA03\t 690\t 110
\n15\t 15\t RB08\t LA03\t 830\t 110
\n16\t 16\t RB08\t LA03\t 690\t 110
\n17\t 17\t RA04\t LA04\t 830\t 110
\n18\t 18\t RA04\t LA04\t 690\t 110
\n19\t 19\t RA05\t LA04\t 830\t 110
\n20\t 20\t RA05\t LA04\t 690\t 110
\n…
\n256\t 256\t RB08\t LC08\t 690\t 110<\/p>\n<\/div>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

abc1234.elp<\/h3>\n
\n
\n

3\t2
\n\/\/Probe file
\n\/\/Minor revision number
\n1
\n\/\/ProbeName
\n%N\tName
\n\/\/Probe type, number of sensors
\n0\t148
\n\/\/Position of fiducials X+, Y+, Y- on the subject
\n%F\t8.32234637390766E-02\t2.89120579329468E-18\t2.31296463463574E-18
\n%F\t3.39487619008266E-03\t6.59033900544577E-02\t-4.62592926927149E-18
\n%F\t-3.39487619008265E-03\t-6.59033900544577E-02\t0
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 1
\n%N\tLA01
\n-3.97947260399683E-02\t-1.85036871127978E-03\t0.144186075913785
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 2
\n%N\tLA02
\n-4.98350336025726E-02\t1.78980580688376E-03\t0.138166000656508
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 3
\n%N\tLA03
\n-6.15314328291852E-02\t-2.54717727969721E-03\t0.129752944790408
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 4
\n%N\tLA04
\n-0.071580415428143\t-6.51126678895884E-04\t0.118963332244569
\n…
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 48
\n%N\tRC08
\n-9.33032828621457E-02\t-3.66886286601061E-02\t0.061854351070638
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 49
\n%N\tEYE01
\n8.04705114345242E-02\t6.38630464399683E-03\t-3.51760526675855E-03
\n…
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 68
\n%N\tEYE20
\n6.76926610340695E-02\t-1.29347077828899E-02\t-7.33785441832711E-03
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 69
\n%N\tHEAD1
\n5.95921980628246E-02\t-5.48139126156096E-02\t1.62552714806087E-02
\n…
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 148
\n%N\tHEAD80
\n4.44414338215508E-02\t-6.06293350309004E-02\t1.77382706928857E-02<\/p>\n<\/div>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

helmet_name.elp<\/h3>\n
\n
\n

3\t2
\n\/\/Probe file
\n\/\/Minor revision number
\n1
\n\/\/ProbeName
\n%N\tName
\n\/\/Probe type, number of sensors
\n1\t 391
\n\/\/Position of fiducials X+, Y+, Y- on the subject
\n%F\t9.000000E-002\t0.000000E+000\t0.000000E+000
\n%F\t6.000000E-003\t7.000000E-002\t0.000000E+000
\n%F\t-6.000000E-003\t-7.000000E-002\t0.000000E+000
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 1
\n%N\tLA01
\n9.740844E-002\t4.525646E-003\t5.189708E-002
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 2
\n%N\tLA02
\n9.513139E-002\t5.030827E-003\t6.225480E-002
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 3
\n%N\tLA03
\n9.152144E-002\t5.191425E-003\t7.238109E-002
\n…
\n\/\/Sensor type
\n%S\t400
\n\/\/Sensor name and data for sensor # 391
\n%N\tRL07
\n-2.620979E-002\t-7.556388E-002\t1.798836E-002<\/p>\n<\/div>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

1234ac_MMDDYY.tai<\/h3>\n
\n
\n

UofI new scaling
\nRAI
\n236 191 171
\n1.00 1.00 1.00
\nAC Superior Edge
\n93 95 70
\nPC Inferior Edge
\n123 95 70
\nMost Anterior Point
\n21 83 81
\nMost Posterior Point
\n199 98 82
\nMost Superior Point
\n118 104 150
\nMost Inferior Point
\n83 122 23
\nMost Left Point
\n131 24 86
\nMost Right Point
\n131 165 80
\nNasion
\n18 95 16
\nLeft Preauricular
\n110 22 20
\nRight Preauricular
\n107 166 23<\/p>\n<\/div>\n<\/div>\n<\/div>\n

<\/p>\n

<\/p>\n

\n
\n

BOXY – Brain Oxymetery Data collection software for ISS Imagent (ISS)<\/h3>\n
\n

Inputs: <\/u>
\n  Brain
\n  EXP\/helmet.gdf
\n  EXP\/helmet.gds.1
\n  BOXY\/helmet.set<\/p>\n

Intermediates: <\/u><\/p>\n

Outputs: <\/u>
\n  DATA\/Data_MMDDYY_HHMMSS.txt<\/p>\n

How to Record data from BOXY – Dr. Kathy Low<\/a>
\nOptical Imaging Technical Theory<\/a><\/p>\n

ISS Imagent website<\/a>
\nBrochure for Imagent system<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

Stimulation PC – Running Psychtoolbox, E-Prime, Presentation<\/h3>\n
\n

Inputs: <\/u>
\n  Brain
\n  EXP\/abc_experiment.m
\n  EXP\/abc_experiment.es<\/p>\n

Intermediates: <\/u><\/p>\n

Outputs: <\/u>
\n  BEH\/abc1234.001<\/p>\n

Everything you need for Parallel port triggering BOXY in psychtoolbox<\/a>
\nExample parallel port trigger test<\/a>
\nParallel port triggering BOXY in EPrime<\/a>
\nPsychtoolbox Site<\/a>
\nE-Prime Site<\/a>
\nPresentation Site<\/a><\/p>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

MRI – Full Head Structural MRI; MPRAGE Aquisition (Now Siemens Trio)<\/h3>\n
\n

Inputs: <\/u>
\n  Brain<\/p>\n

Intermediates: <\/u><\/p>\n

Outputs: <\/u>
\n  \\\\bi-files.beckman.illinois.edu\\BIC-DATA\\MRI\\MPRAGE\\*.IMA<\/p>\n

Location of landmarks on the skull<\/a>
\nFiducial Mark Protocol with T-bar<\/a>
\nProcedure and Diagrams for Placing Beekley Spots on Fiducials<\/a>
\nDimensions for Fiducial T-bar<\/a><\/p>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

Optode and Scalp Digitization for Coregistration – Polhemus or Vicra systems<\/h3>\n
\n

Inputs: <\/u>
\n  Brain
\n  EXP\/abc_helmet.seq<\/p>\n

Intermediates: <\/u><\/p>\n

Outputs: <\/u>
\n  REG\/abc1234.elp<\/p>\n

Fiducial Mark Protocol with T-bar<\/a>
\nDimensions for Fiducial T-bar<\/a>
\nCreating or Editing a Seq File<\/a>
\nDigitization with long wand protocol<\/a>
\nGeneral information about Polhemus<\/a>
\nPolhemus FastTrack Site<\/a>
\nPolaris Vicra Site<\/a><\/p>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

NOMAD – Near-infrared Optode Montage Automated Design
\n(Dr. Kyle Mathewson)<\/h3>\n
\n

Inputs:
\n  EXP\/avg.elp<\/p>\n

Intermediates:
\n  mtg.mat<\/p>\n

Outputs:
\n  REG\/sub.mtg
\n  EXP\/.gdf
\n%nbsp; EXP\/.gds.1
\n  mtg\/schematic.bmp
\n  mtg\/distance.bmp<\/p>\n

2015 Optical imaging summer school Nomad Talk<\/a><\/p>\n

Current Version – 3.3 – coloring scheme and order now works for CNL – Pauline’s Study<\/a>
\nVersion – 3.2 – .mtg files now directly ready from opt3d<\/a>
\nVersion – 3.0 – Create Boxy .gdf files automatically!!!!<\/a>
\nVersion – 2.6<\/a>
\nVersion – 2.5<\/a>
\nVersion – 2.4<\/a>
\nVersion – 2.3<\/a><\/p>\n

nomad readme file by KEM<\/a>
\nA technical flow diagram of the nomad software by KEM<\/a><\/p>\n

\"\"<\/p>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

P-Pod – Pre-processing of Optical Data
\n(Dr. Ed Maclin)<\/h3>\n
\n

Inputs: <\/u>
\n  OPT\/.001
\n  OPT\/.mdf
\n  EVT\/.001
\n  OPT\/.skp<\/p>\n

Intermediates: <\/u>
\n  norm00-00\/.001
\n  pc00-00\/.001
\n  pc05-08\/.001<\/p>\n

Outputs: <\/u>
\n  pc05-08\/.avg<\/p>\n

Newest versions at Google Projects p-pod site.<\/a>
\nLatest Manual for P_pod – June 4, 2013<\/a>
\nPaper describing the Pulse correction procedure used by P-pod<\/a><\/p>\n

\"\"<\/p>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

COREG – COREGistration of Optode Montage and Structural MRI
\n(Dr. Ed Maclin & Chris Whalen)<\/h3>\n
\n

Inputs: <\/u>
\n  MRI\/acp.BRIK
\n  REG\/_ac.tai
\n  REG\/sub.elp
\n  REG\/sub.mtg<\/p>\n

Intermediates: <\/u>
\n  scalp.zip
\n  optode.brk
\n  banana.brk<\/p>\n

Outputs: <\/u>
\n  REG\/sub.tol<\/p>\n

Latest Manual for COREG – June 4, 2013<\/a><\/p>\n

\"\"<\/p>\n<\/div>\n<\/div>\n

<\/p>\n

\n
\n

\nMOPT3D – Matlab 3D Reconstruction of Optical Imaging Data
\n(Dr. Kyle Mathewson & Dr. Gabriele Gratton)<\/h3>\n
\n

Inputs: <\/u>
\n  REG\/.mtg
\n  REG\/.rol
\n  MRI\/.nii
\n  pc##-##\/.avm
\n  pc##-##\/.00#<\/p>\n

Outputs: <\/u>
\n  MRI\/.nii<\/p>\n

Current Version – 1.0 – Matlab Optical imaging data 3d reconstruction, set parameters in mopt3d.m file<\/a><\/p>\n

Latest manual for opt3d – June, 2013<\/a>
\nSpecifics of the input files needed for opt3d analysis<\/a>
\nA matlab script to crop the opt3d maps for figures by KEM<\/a><\/p>\n

\"\"<\/p>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

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